Scaffold Ga0207677_11013711

Overview

Basic Information

• Taxon OID: 3300026023
• Scaffold ID: Ga0207677_11013711
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 753
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005165	Metagenome / Metatranscriptome	410	Y
F016609	Metagenome / Metatranscriptome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207677_110137111	F016609	GGAG	MAISQRLVDPYREIRVPTSYSWQDSYKAALLETDWTKMQERIRAAETALHDRKHQFALDHGGTPEENQAIEDALHGLGILRSEAAAWQESKRAS
Ga0207677_110137112	F005165	GAG	MSNTNDATRQEWRQLCQAALFETNTVKLLERIACARKAVLDRIEDGHSKSPNGEQTALREALATLETLRRITERQNGYQSKAS
Ga0207677_110137113	F016609	N/A	SALLETDWSKIGGRIQAVEAALHERKNEFALNHGGTPAENQAIEDALHGLGILRKEVVAWHESKRAS