Scaffold Ga0208140_1000285

Overview

Basic Information

• Taxon OID: 3300026021
• Scaffold ID: Ga0208140_1000285
• Source Dataset Name: Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_404 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7965
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location

• Location Name: USA: Twitchell Island, California
• Coordinates
  • Lat. (^o): 38.1087
  • Long. (^o): -121.653
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001450	Metagenome / Metatranscriptome	692	Y
F004287	Metagenome / Metatranscriptome	445	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208140_10002856	F001450	N/A	MQPPADERPLIRVTREIHEVPESIEERVTRAGGLNWLGQPNFRVVWGGARLAWIGGRWTDRDEHGNVIRERVELRRVPKYLPTERWYVERWMPPETYGPPELWSAQTVETEDGIRIPALGPYPSRGEYEHCFTLQTATGDFIPLSPAACDGVVRAIEWARQQDPAVKRASLAARELRREREWERLADGILDHALAGS
Ga0208140_10002857	F004287	GGAG	VNTIGEQESRTGLLEGNSPEDAAATVSIASISDQDWYISRTHGIYHIPACAKGELYALLLISARSDALDLGDNRRFPFTISAREIADDLLQDLRDHGIFVCAGPRPTTAELDAAKARRDAFYQTLILDGDTMWARGHSFREISDMHRRAAIAMGVEREWAYVPARLDDCPVCGEKIKHGVAVCKHCRAILDEEKAAKHGLHKENPEFRSVIVKSELAPANGANRTAAQTGPSSSNHSSGSARR