Scaffold Ga0208140_1000208

Overview

Basic Information

• Taxon OID: 3300026021
• Scaffold ID: Ga0208140_1000208
• Source Dataset Name: Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_404 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10006
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location

• Location Name: USA: Twitchell Island, California
• Coordinates
  • Lat. (^o): 38.1087
  • Long. (^o): -121.653
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032355	Metagenome / Metatranscriptome	180	Y
F085925	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208140_10002084	F032355	AGGAG	MRSVKPTKSARPDFVDARIAQLQRQLATEKNETRKSELQDEINDWQRSRTKQRNDRGRY
Ga0208140_10002085	F085925	GGAGG	MDAFLREELVAAGLRLRKAISRVVKESPECFTHKDGSWSFEFRNPATGEGIVVTYASPTMPLYPN