Scaffold Ga0207668_10062277

Overview

Basic Information

• Taxon OID: 3300025972
• Scaffold ID: Ga0207668_10062277
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2626
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000199	Metagenome / Metatranscriptome	1639	Y
F005257	Metagenome / Metatranscriptome	406	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207668_100622771	F000199	N/A	MHLGPFGCIRKLGAKRAELVQKFVPRSRVGIFHNKGTRSTPLDRKMMFWYILYYLGAFGTVWLHYKNRCKKGRTSAKVRATKSRRNFSQ
Ga0207668_100622773	F005257	N/A	LGSNGVDRVRSLRKIPTRLRGTNFCTSSARFAPSFVRQPNGPKCTQIVQNAPKHQFRVQWGGLGMFVVKNSDTTSWHELLHFLGPFCTEFRKATKRPKMHPNSTKRTKTSVWGLMGWTWYVHCEKFRRDFVARTFALVRPVLHRVS