NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0207651_10597105

Scaffold Ga0207651_10597105


Overview

Basic Information
Taxon OID3300025960 Open in IMG/M
Scaffold IDGa0207651_10597105 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)964
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029684Metagenome187Y
F038428Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0207651_105971051F038428AGGAMKLLIAAISLVLSVAIDAEEAKSIKYNTASGSQIIITDLGLIPGGTFSSGLAINNQPVIVGLANDSTFAFKRPFWDANTGVIIGFADNFSPASTAIPEHVNGTREMAGSEVYGDNVYQGIYWNPTGQAFVLPPLAGFDPDYGSVHTRAHGINNLSQLVGTGKEAEPNFFTHAALWLNKDTEAVDLGFLGQGIPLNYS
Ga0207651_105971052F029684N/AVGGGGGGIPCGDLVSFQVRCKSGDGGQKLQAKLTLTNTSHSGEKVTITVDGNPTPVTINGNKAQLSINNPAPGEHMVELTDPADCFPPMTPSCN

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.