NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207651_10166345

Scaffold Ga0207651_10166345


Overview

Basic Information
Taxon OID3300025960 Open in IMG/M
Scaffold IDGa0207651_10166345 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1734
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031630Metagenome182N

Sequences

Protein IDFamilyRBSSequence
Ga0207651_101663451F031630AGGMRERIKNALAEVPRATVSTVHYLYLARIPFLGWVTLFGLPLLAITVGRPLVLAAYDLGSSGEAFFVGIAFGLAGGSIYFTAHVITNLCSNRFRLEIDPIVQSRLDKVWASAILLALLINILVGASASKPVLSYSGRIAAAMIGGMLVAFVGAFAAEAISSSFPKNPVYRNLVWLGIKIGLRKQKGYLRPISADVETNDPANWKYEEGHVRAASYTFIVVV

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