Scaffold Ga0207651_10015700

Overview

Basic Information

• Taxon OID: 3300025960
• Scaffold ID: Ga0207651_10015700
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4411
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022436	Metagenome	214	Y
F028841	Metagenome	190	Y
F033849	Metagenome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207651_100157004	F028841	GGAGG	MSDVRDLEAIAAKLEQAMVQLRLIGYGDISAIGYGQILDARCLLAEAQGRLDSMRKQEAA
Ga0207651_100157005	F022436	AGGAG	MLKPVRVFRNHYLCDACDHEFADEMLVVSSSFCPCCDSEIEPYSSEDLFDIEAYDDEAEV
Ga0207651_100157008	F033849	GGAGG	MDIQAHEDGTGYAPASERWYALDMDTYDGCEDGNNREGRGSSAKAAVMDLIERMLDDGEIGHDECRELFRIYHIDPKEVGYGG