Scaffold Ga0207661_10000006

Overview

Basic Information

• Taxon OID: 3300025944
• Scaffold ID: Ga0207661_10000006
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 537727
• Total Scaffold Genes: 506
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 298 (58.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009712	Metagenome	314	Y
F012391	Metagenome / Metatranscriptome	281	Y
F038723	Metagenome	165	Y
F063979	Metagenome	129	Y
F105755	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207661_10000006142	F063979	GGAG	MNYDLAMMALDGLMRTPLTVRADAAGVTFTGEPAAFKELARLCLLLGGASDTDDSFELQPNVHVTQGSPMVNLRLASA
Ga0207661_10000006314	F012391	N/A	MSEDEKGATEEDTQKIEVIRGAEVLGYEGAGREEHSGENSPTRANDPRDELADNKPEDLR
Ga0207661_10000006336	F038723	N/A	MSDQRFDMLSSSESGLTYVREKRGGVMRVLTESELADFNDPPPCPQCAEQFGCEHFNCAGEPMLSEDEIASVAPPQWLAFAKACGISREDLDRLKLIEEHEGEYRVAPGADMRTQEIVLLLNER
Ga0207661_10000006353	F009712	AGG	VSAIFGRLFQLIGMIILPIGLLTGLLKDNVNLEVRLLFIGGAIFLIGWLMAKKTA
Ga0207661_10000006392	F105755	N/A	VIAAGRLSPGAQTLRLIRPLVVLLLLTALPACTVNVRRYAFNAALENQKHIDKLRIGQTLAEVERIMGKPPERRNAHVRFDGISIEEWSYVTDYVRRMDTTITFVGGKVDEIRSASWESD