NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207689_10510441

Scaffold Ga0207689_10510441


Overview

Basic Information
Taxon OID3300025942 Open in IMG/M
Scaffold IDGa0207689_10510441 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1008
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047526Metagenome149Y
F076798Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0207689_105104411F047526GGAGGVQWYCGFFLFPFVFKFPFLLTCFLVPGLALRVEKQKLSEGIEEMKILVHNSHNRAEEVITRAKEELALAKLIRRGADRD
Ga0207689_105104412F076798N/AMFVFLLSLCLVFLSLFAQSFSHDHTGFFFSSETEKKLSSEVSALKTELDLCRAEMETERQTHQREEQALRARVVDTEKRRDAAV

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