Scaffold Ga0207711_10000006

Overview

Basic Information

• Taxon OID: 3300025941
• Scaffold ID: Ga0207711_10000006
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 792692
• Total Scaffold Genes: 799
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 539 (67.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005789	Metagenome / Metatranscriptome	390	Y
F020958	Metagenome / Metatranscriptome	221	Y
F076000	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207711_10000006139	F076000	N/A	MMVAMARSGGGAPETGWAAIRPVLVGFLLVVDAFAVISLAVVRPEDWWAPFTGFGVVLVGLVWFLSWSIRHRHDDD
Ga0207711_10000006602	F020958	N/A	MSATTTAKKWTCDQCGVTVSRVGGEKVELPPSWDTSKEGTFCLLCRRERAAQAALAAAPQGSIEDRAKLRRAALVEFEVRRRPGHGNGEIAKACRSSVAAVVAARKRLKIPAPTN
Ga0207711_10000006755	F005789	AGGAG	MATVVALDSSPANVLRSMRGAIVDARLGYPEVLHVEIKDLAGETWQLATQDADWTPSDPSELVGQSIEDAQIDEESGELRCKLSNGSLLDVKPARKEADADPPNWELITPGGVLLEFGPGVRWQISSAEEPTSFRR