Scaffold Ga0207691_10010717

Overview

Basic Information

• Taxon OID: 3300025940
• Scaffold ID: Ga0207691_10010717
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8801
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057721	Metagenome / Metatranscriptome	136	N
F101412	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207691_100107171	F101412	N/A	LPPGERGAELLLAHCAPPTDADLSRPPALLRLEEALGGELARLLVGALATRRSVRSAVLP
Ga0207691_100107175	F057721	N/A	MHGNLRYVKSTWIGLLAVLALASPARAEVVTQKADRGVLAVAADGSPWVAYTVGRGLYASLRGSQGRWTAIRLGRLPANSGITLAGIQIGERPHRHVNVLVEDGQGRWIVLARGSRLTTIARAARGSSFGPAGLTLDAGGRPAIAYAVQRKTGQTFLRLVTFRADGSRQTRPITLKGFPKSDLPPGAAPVLVGGRLHVVETYTSAAIDWGPTRHGGWEGQYLFVSRLGSPQGRVGAVSLPSTLWSAWTQVSPQAEPEDIVVLLNSSATTQVTSTLTHGIFVSIARGEEDQPEIGAYDWVGLGEDWFVYAGLILRGTGSDAWQLDGRLEGFTIGKLGTRQLLLSREGGLEWFRSPAALPPVRIGMGKVDETGHLDGSVPGVTSGTVELYRELPHAPRQLVATLPIHADGSFEAEGLDPTALYRAVYVDPGTGIPFGFLPGVPVGIAAD