Scaffold Ga0207691_10000005

Overview

Basic Information

• Taxon OID: 3300025940
• Scaffold ID: Ga0207691_10000005
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 163117
• Total Scaffold Genes: 166
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 106 (63.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002483	Metagenome / Metatranscriptome	555	Y
F017066	Metagenome / Metatranscriptome	243	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207691_10000005124	F002483	N/A	VPAVPKLRWRQAEAPAPRRRPRSYYLVAGIDLAEEMERLRALPAFGDGPLAERRPELKVRRASRRPNRLGFAVPSQFRLSVTAYPGIRPGDVLETLLHELVHLHVGRAKEAHGWHGPTFKRVLAQAMREAYSVTIPTPRATLHGPYAEALEAKSRETAEIRPDDAFLRSRV
Ga0207691_10000005125	F017066	GGCGG	VTLPLAHHSALVALPVFAPALVVVLVLLVHRMRERRRWEEEEAEG