Basic Information | |
---|---|
Taxon OID | 3300025939 Open in IMG/M |
Scaffold ID | Ga0207665_10020235 Open in IMG/M |
Source Dataset Name | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 4371 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Michigan: Kellogg Biological Station | |||||||
Coordinates | Lat. (o) | 42.4774 | Long. (o) | -85.451 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004003 | Metagenome | 457 | Y |
F004186 | Metagenome | 449 | Y |
F025117 | Metagenome / Metatranscriptome | 203 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0207665_100202352 | F004003 | GGA | VIAKLIRIAVALAAVGLLGACGGPGTPLGPPSAKDILAKPLHTNLNDAHFLVSGKFVSPSPGVSVDVHGDGAVVYKNPGAGRFKFETTVAGQKVSYQDISVNGVDYTFVVPGNGKWTAKTTSSGLGRDSFTGASDFAYVGEENLQSGKCWHAKAKDKDGNQFDGWIRESDGYPVKYEVTQQGNALTLSFDKYNTGESITAPPASQVVQG |
Ga0207665_100202353 | F004186 | AGG | VPLRRLLLAVGAAVLTAGCGVPTPAAPPSASEVLAKPQQSDLKDAHFNVTGKITDNGTTVELSGDGALTYKPKLAGRFQFTTNVGGQSVTIKEISLDGTNYGMTPASPKWVATKSTTGIDPSAFAGASDQKYVGEENLPQGKAWHASAKDKDGNAFDAYIREKDGYPIKYVETQSGGQNITLTFDKYNTGEAITAPPADQIQQG |
Ga0207665_100202356 | F025117 | N/A | QNGYSEVTSMTDYYSLYTWAMDKQAHLEREATQRRLVRHSRYVTTHDNARPRWPFARRRDDERKAA |
⦗Top⦘ |