Scaffold Ga0207665_10009710

Overview

Basic Information

• Taxon OID: 3300025939
• Scaffold ID: Ga0207665_10009710
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6317
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026686	Metagenome / Metatranscriptome	197	Y
F061171	Metagenome / Metatranscriptome	132	N
F077875	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207665_100097104	F061171	AGGAGG	MLKPVTLLRVRAAMTCYDLAAVLLRATAVVTIVWAASLASWQVLVHSHAIFGSFTFGVGRLWLSGAGALLGCGGFLACRVLEGHSDVRRWVLYVYGFAFLVFSLVLLMEWFEVSGATGFR
Ga0207665_100097107	F077875	GGAGG	MRFLLGFLFGASYSGNRPFRVAFLLIILFLAFCAYQMSKPLGHNGRVTQPSAQVR
Ga0207665_100097108	F026686	N/A	TKKLSGEVAARHGLLIREDDPAMALVTMSEIVLEQVLSEAELRLRGLLSEAEKGQKRSQQETLVWVQEEMGRAGSALRTQLQRDLDAGRLQARELVVQLSQVYARSAVRRWVALGIVSGLLLVLIGVGLGLELGRWLR