Scaffold Ga0207665_10000380

Overview

Basic Information

• Taxon OID: 3300025939
• Scaffold ID: Ga0207665_10000380
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30569
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001811	Metagenome / Metatranscriptome	631	Y
F002291	Metagenome / Metatranscriptome	574	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207665_1000038026	F001811	AGG	MRGFSSSVLSCLERQRLEEELSDARIRGRNLSRLRQLTQRERMLLDEREQTAQARLRDHDAEHGCQR
Ga0207665_1000038029	F002291	AGGAGG	MSSNPMPQGSLVLLWAGEDPAVHAALLEELEAAEIPFSDKSLGDDEVAPTADPLPIDWKPRFGFEVAVLSTDLAAGQEVLEKLLEEEPADLEIPERDGVASSEPPLVVATETNPTVEIWKGSDDRIAQFLTAAMQENEIPIHLENPGEQTRISVSAANEKRAREIVREVVEGAPPE