Scaffold Ga0207665_10000115

Overview

Basic Information

• Taxon OID: 3300025939
• Scaffold ID: Ga0207665_10000115
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52837
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002830	Metagenome / Metatranscriptome	527	Y
F003449	Metagenome / Metatranscriptome	486	Y
F038383	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207665_1000011515	F002830	AGGA	MRKTKLTAGLLAFSLLLAAGAIAGNSNKGTLKVDETITVAGKQLPAGEYQVEWAGSGPSVEVSISGYKGSVANVPAQLVPLKKAEPAGGYSTSTDQAGNKTLTGILFGGKKYQLSIGEASATTGTPSDKTQASN
Ga0207665_100001154	F038383	GAGG	MPLTEEHTISNSYPVEASGWDIAHLFFVEKSELEWKEGSGKYLTLSRSLCPGSMIFLRLVQNTSLDRSIPVAYRAHHVGVTPGGQQQFRLKQVQPNCGFIGKEK
Ga0207665_100001158	F003449	N/A	MFRFQYCVTTTASRKLAWEVFSNWRRWNEFANIYGQLEWREGRPWEAGSRLDIEVLDPVKTVVSHVITNCQPAHRVGWIDHSLGVVLAQWVNFEEHTEKGTRVHTWGDIVHSGVKIAGQTAEQVITSFTETWYENFRSACDRLAEASGD