Scaffold Ga0207665_10000043

Overview

Basic Information

• Taxon OID: 3300025939
• Scaffold ID: Ga0207665_10000043
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 82623
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (81.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005666	Metagenome / Metatranscriptome	393	Y
F007493	Metagenome / Metatranscriptome	350	Y
F026411	Metagenome / Metatranscriptome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207665_1000004313	F026411	AGG	MKGREQKNSAAPMGTSPASECRAEFIFYARNQSRKLGSVEVLGDYACDFRRPDWTHRWTDWNSGRNQYLNLFLCAKHARELGLL
Ga0207665_1000004315	F007493	AGGTGG	VIGTTTALIGAAVLLVVILVWIRGQSASRHSPAVMEDWLTGQDDITDACPPEFVSQIFSSRDFEFISQMESVDLKRLFLRERNAVALLWVQQTAAAIRRIMRRHLEASRLSADIEFKTEARILLQYGQLRLICGALFLLIGLGGLQRLQWMALRADKLTQRISNVLREFESGAQSREMDGMQSS
Ga0207665_1000004325	F005666	GGAG	MKAVTIRISLLIAVLAAVCVARAQAPLEPAQMSPRTMFYMIWRGVPPADVRKTNTLLALWDDADFAPARSAMAAGLLGSSDEKSTQPKLTSEQVQEFAGLLENSFTLGYWSEPTRRNLSTGAAVADAKAPAWNGMFFVYDRTGKEMLLTKAILLMRAGEKEPPRLSQVAIAGVQVLKVEGKSGVTYWAEHGKYAVSAGEKLVMEDLLSRLDGKVAVGGASLAQSAAYQEAQTNLSGGLLEFFLRIPDLKNLANDSKTGVFQMRPLLDAARLDAVHSIGGHLTFEGVKTHVQAAILGEAVPGTPFDIWSAGERAPASLALTPADAVSYTSAHLNFQGIYDTVKRVASAAFPQAQQGNVNLVDAMAQQKLGMPVADALGLLSGEFASMQTSPSLDTAKQVYFFGIRKKPETLKLMRTVFSDQITSERNEGDVTFVKISLGGKQATEGVAQWNFFNLAVTPDMILGASKMETLREALARRSAGTGGAGLAGVPQFAAGRQQFPEKLIGISYFDFQKVDWAAARDRWVAESKKSSVAKSMNASGQSASMANANEWLLQMNPQVISRHLHRSLSVSWKDSKGIHWDQWVE