Scaffold Ga0207665_10000034

Overview

Basic Information

• Taxon OID: 3300025939
• Scaffold ID: Ga0207665_10000034
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 88735
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 67 (85.90%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000941	Metagenome / Metatranscriptome	826	Y
F057623	Metagenome	136	Y
F075202	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207665_1000003414	F075202	GAGG	MHPSTQSPELSALPRSHAWVCFCLALFLLYNPFMAATSSPGGLNIRHPPSNRATVGASELQHFSPADGLDKLSTPAAPAVLPFVSFPEASSRLFELFPQVVTPPQQFFGSGLWFRPPPAL
Ga0207665_1000003459	F057623	AGGAG	MENVYKQQPGLFRLRAIAIWEWLMILPATLLLAAAALRVLQPRQYEPARTSWMIFEWAMTHISRLGAAILFIGLPGVVVAAGCAALLQNWRKDQALRHEMTTLFTILRLRLAFCLLATAVLLAGAILASLAVHVVTD
Ga0207665_1000003462	F000941	GGAGG	MNVTCSDRDRIFEDGTPADWAALETHAASCPLCAEEVRAWRSLSVAAQELRDYSDSPSFWPRIERALAEEVAQKAQGAELRRWFSFLPEISLGWQTALAGAFILILTVSAGWILLRPPFGGSGKEDHSLLKSNALKEVETAETAYERAIDKLAAEAKPQLDNPATPLLANYHEKLLVLDSAIADLRAQAGLNPSNAQLRYQLLAMYQEKQHTLEEVLEARQR