Scaffold Ga0207665

Basic Information
Taxon OID	3300025939 Open in IMG/M
Scaffold ID	Ga0207665_10000030 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0207665_10000030 Open in IMG/M

Source Dataset Name

Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	94900
Total Scaffold Genes	93 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	73 (78.49%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

94900

Total Scaffold Genes

93 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

73 (78.49%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.4774	Long. (^o)	-85.451	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan: Kellogg Biological Station

Coordinates

Lat. (^o)

42.4774

Long. (^o)

-85.451

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001959	Metagenome / Metatranscriptome	611	Y
F003970	Metagenome / Metatranscriptome	459	Y
F006398	Metagenome / Metatranscriptome	374	Y
F006913	Metagenome / Metatranscriptome	362	Y
F022506	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207665_100000302	F006398	GGA	MSNSKRYCQTCRFELDNRGFTRHVLSVFHRKAKLIRAMLERDCITHAEIARRIGVTRERVRQLALQMGFADGRSRHAICRMERRRREMGEFFVEAQKRGFAVEPLGGRRAYINGKLCVQRKACWHDIGKTGYKYTYLSICRPGGRFDICGWKLPDGRFLILPRKLIGFQQTTFNPEESDHLGTASSSHYYREHIEKWSLLGRPRRSK
Ga0207665_1000003029	F003970	GGAGG	LLSDHVYHFFGRTITITGREELLAIVVLVVAVTAWAVQQFRRRRAVVLQRSVVSDQIVYELSRIADALDRISNRPVDQYIAAPSRETDESTGGRIPLSMFGR
Ga0207665_1000003046	F022506	N/A	MTNSIVLRCDGCGQGASTEHSARRLQRLEWTTRYRPVHIHTLLLGAFSPLRDEEFLYASSGEFRGEAVQVLDAVGISTAGKTRDAVQAEFQRAGFFLTHVLECPFEDGKSLEAGAGAVLKKRLATVATRVRRSLKPKRVMAVTEELAVVLDDILAMDLGCPVLLDHGKPFLLGSRGGENGAARLREALAAAGLG
Ga0207665_1000003055	F001959	GGAGG	MKNLGSVFAAYVIGWGVFFIYYITVARRTAALGEQIERLKNSLNRSK
Ga0207665_1000003082	F006913	GGAGG	MDPETKRAWRRLTREVRESTPIVLRGLASSGRRMPGNVYSAVVRGFKSLNNRAREWEASLGGRRALISQLARVRLRSPIYKA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207665_10000030

Overview

Ecosystem & Geography

Associated Families

Sequences