Scaffold Ga0207665_10000011

Overview

Basic Information

• Taxon OID: 3300025939
• Scaffold ID: Ga0207665_10000011
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 145201
• Total Scaffold Genes: 119
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 88 (73.95%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000886	Metagenome / Metatranscriptome	849	Y
F001909	Metagenome / Metatranscriptome	619	Y
F001920	Metagenome / Metatranscriptome	617	Y
F002112	Metagenome / Metatranscriptome	592	Y
F002886	Metagenome / Metatranscriptome	523	Y
F031225	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207665_1000001120	F001920	GGAG	MSDNRSHGGMVVNWRGPLLAGGIFAAAFAILLLMAHQNQSTTSDMGSSLREDPYGTSLLFDSYARAGYQVKRSQDEDSLSDQNAGSTTAFFIGGYPYNDWENGKGKLRNAGKFSGRLEAFLARGGRIVLIQPAWKLKSESQGWEVENKWNETPKEPGPTWISPDLHEMPAGSEMMYLGADAPRLKTDKHWTTLYAGPTRTDAKADTSGNVYMAIRRVGNGELIAASQEWFLLNETIKTHPNPVLLDFLTGGRPVIWVDETLHGLHQNQGVLWLVQRYRLQVALMLFWAALLALLWSISGDLVRRPRRDQNAQIVRHGEGAGVAARHLLQRSIPSEQVVAECWEQYRHRSPQDARAISADPRCGPRLRAALTQTALAGYKELSQLIAERRASAKCPAHTDRVAPDSSTATPKRIPEEARIA
Ga0207665_1000001123	F002886	GGAGG	LKSAFRKISRVGSLTGGTKWYLSEDCLLAAKRMMYAVEYRRFYLRDLESIVVWPNRAWLWRMVLVVVLFAGLGVAFWQWVDSTAGAIFGVVGLVWVTAELAMGPTAGSRIRTTGASVDLPLAARTRRARKVLVKIDAAVRAARGGVEQPTAPVTNVQPGEPVPQTNSEAPSGTVSIADATQTNGS
Ga0207665_1000001154	F000886	AGG	MRKVYYNPVRKLTLILAFLAAPLLLPQNGVPQQPASLKTASLESHEGMTITARPWTDPALYKAKFPKKSPFAAGIVAIQVSFRNDSDDSMKVNLERIRLNVSLSEEDHQSLYPLSSEEAADVITHPGSKNVTMKRLPIPLGGPKVGHDKKWVEVEKNLSDAGVQASIVAPHGTVEGLLYFDLRSQFDLLNAAHLYVPEIVAIEKNHGLMYFEIDLSRSAGN
Ga0207665_1000001183	F001909	N/A	MTRLTGPERRRRARLRLRQTVRVRPSDARGHDFDEILPTLNTSRDSVYFASKNEFYTEGMRVFVTYPYSDGPGSLNRESLGKVVRIDDLGHGRRGIAVEILMPVYLGGKETLK
Ga0207665_1000001184	F002112	GAG	LPGPGNQIHDLNPSAFPPVGLFWTTEIPVAGVDVQLGKGSASLQASDVAILDYGNIPNALFGGGPPPTSGTVSFKVVWSGVDERLNIKNTDPVFGGFAGEFVRNRAQMEWSATVGNYTFVSDSLGTSSSSFAEIGHERNGSFFP
Ga0207665_1000001199	F031225	GGAG	MPSSTSSSEPRALFYSKVLVGICAVVIVLFEFLSDYLLKHHSETHNRVSHQYAEALKMQPARPGQPTSVLMVGNSLLLEGVDVNRLKELTSGQMHICPIFLEATGYYDWFYALQRLFREGARPQVVVFGVGVNSFLANSVREDYVPLMLFDMRDSIGVASALKMDRTASSNLLLAHSSVFWDTRTVLRTQILRHTVPHYQELVLLLKPQPVIPPPAQFQAIASNRLERLRELCESHGAKLIILVPPTPSSEDAVHQMAVAAQRARVETLIPIDPAALSARYYQSDELHLNPEGARLFTTALATFLPRTVDHEQGASPN