Scaffold Ga0207665_10000008

Overview

Basic Information

• Taxon OID: 3300025939
• Scaffold ID: Ga0207665_10000008
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 173434
• Total Scaffold Genes: 140
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 111 (79.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001597	Metagenome / Metatranscriptome	666	Y
F014186	Metagenome / Metatranscriptome	265	Y
F020427	Metagenome	224	Y
F066085	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207665_10000008127	F066085	N/A	VAYPVSPWIRGLPVGTCGQLPTWQSQGILVVREIDAQMRNTSRNVLLTAYLLLAGLPAFTLEQNPPPPKKLPAGPAAPQSTHYPIFILAFGNDPNWSLRIGQKGPERMDRPGYPPIALEGADVTHEATADSWTYHAKDSATGAAVAIHLTREPCTDAKNDTLNPSPPPSGKYSFRASVEHAQLGSMIGCGRIAAELFPKINNQPDQEEDDDAKKKPPVPASSVSNFKSPVSVAYLNPAGKIVFKRGATTHLIASEGAPLAVSHDGKRLLYTHQDKPEDRAIFLYDFATEKSTELVRGQVQQAFWSPDDARFAFMKFVDGKWRLWAALVTSPETAASVFPGDIVSIHGWVDAQTILVDDLQQLSWVTDTGAVQQAILEKDILGDAFASSSAGTFRVHPLNPDLLLVSAEWLKPPAGVPTDTHTGSSFGLFLYEIRSKRRVLLSPLNMFAQNAEWSRDGFQIFFTGADSARRYGTYRMFWDGIGLQKYVSGTSLAIGQ
Ga0207665_1000000827	F001597	GGAG	MDEITKQAAQEYLAAKLTEEEQIYEAQQNRALAVARSGWVWKSVKDSIFEKCREWNAVTQEQTLTCKETALGDLRIWCAAQSKQMTVHYDSRKLLITVKNAGRLEHEKDVILHIEGYRTGPERTDRAVRLTRNEQPVNIDLLIVGELRVLTGLERQRK
Ga0207665_100000089	F014186	GGA	MSARLVHSSVRQMPVILTTTPPSGTDHLRDPSLANGRRLILATLVLLLFPALSCGQGAPQAKERELLGSLTTVGEVYVNDSLAPAEITIFSGDRVRAGETGSATFNMSGKGSLKLPPRSQVLFAGKYEYTAELEAGAVVMNSISGPNGLTLRIGNDVLVPSTKEHLALASIDRAPDGSYLVTCSDGAIGVLNLQGTAGQFLQVGQAVSVAPNGELFPVVRQDMTPTSSARSVSGARKSRGSFTGWGYLGLAAGGAAGAAAALAHGGGKQSVSPAGP
Ga0207665_1000000892	F020427	AGG	LSNRLIEHGEAAPPNNHKTPKWARILIGLFVVALVCVAYLWFFGFQTLIVLEARYLTRKTPAVRMAPAQLADFSISRSPGRKLSYFGYEFEVPWNDVDEAKSGLIPDKNKAMIVFQSGNSLSVWHGSPRSFLNTVLSNDKIDQNTLRRIVGDEALQSDYALYRTILQMTPDRMTPFESQSDAANQALLLLVKGICMPTGAASGVFSVNAGEFSGFQFGRPANPSSEVSVRLFSDSSSLNFIFIQKAGGPALISQPDINRILHTLHKAT