Scaffold Ga0207704_10202235

Overview

Basic Information

• Taxon OID: 3300025938
• Scaffold ID: Ga0207704_10202235
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1455
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039079	Metagenome	164	Y
F076536	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207704_102022352	F039079	N/A	MSAVARLDEWADAPRAIRVVHDIPGRLRLRLPPGASTSGLQGVIDGLNGAQSSVWSPRTRSLLIRYDAGVLTSAEIAQAVAEHADVDPPASSPDARAEEGRSPVSAAIVDTFNGVNERVTRRTRGRVDLGMLVSVGLVLWAGRQLLRGPVTSLSWTSALWYAHGLFRDYTAPPRGR
Ga0207704_102022353	F076536	GGA	MRRTIAHSVRGRLRVRYPAHWLEPRYSAIESELRTLPGVRAVQGRPLTGSLRIDYDPYSLAADAIVDKLDRMTAELAAPSTSIPAHPPRGPRQTLPSAPVLKVLGATSMLVTACCLPVPQAITAGLLLASAAPAFFRAGATLATRRRLNGDVLEASTLSVFRGPES