NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207669_10818984

Scaffold Ga0207669_10818984


Overview

Basic Information
Taxon OID3300025937 Open in IMG/M
Scaffold IDGa0207669_10818984 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)773
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047523Metagenome / Metatranscriptome149N
F097678Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0207669_108189841F047523GAGGMSGFITGLKSVEEVEAGIFEVVVTLQRGATAKLRMNTFTFQAFVTKFIDGPRPERWLDKSIYVLKKIFAPLRHSQKRQ
Ga0207669_108189842F097678N/AMQPKPKWTAATLVVLVAATVHTMHALAIAPVPMVHRSDGPSANSSKTYDEWQAPLNRSFRARFLDHRTAEDPIVGGVPGRGFTLPIFDGLEKMQIWDNAP

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