Scaffold Ga0207670

Basic Information
Taxon OID	3300025936 Open in IMG/M
Scaffold ID	Ga0207670_10000400 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025936 Open in IMG/M

Scaffold ID

Ga0207670_10000400 Open in IMG/M

Source Dataset Name

Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24970
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (87.88%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

24970

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

29 (87.88%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan, Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan, Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031540	Metagenome	182	N
F044569	Metagenome	154	Y
F049717	Metagenome	146	N
F050455	Metagenome	145	N
F062864	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207670_100004001	F031540	N/A	LASFQQLTDDVLWYLDRRDAAARIPSWVQLVETEIQQTLRARCMEVSATQPVDSAFITLPPDFCTMASIRDAATGNNLVLKDEWSGSWTDVSGSPPVDYLYPGTYYGNRRTWAYRLVADCIEFLPHPWLPDPPDPLWVPQTVIMNWYAKPRALLLPSDTNPVLEQLYSVYLYGILAHATLAEQDEPMAPQWDAKYQQAVTRANLNTQQSTMSGAPYTEEMSGVFG
Ga0207670_1000040024	F062864	AGGAG	MRYDYKSPRMERDRDPVLSALLRQRGMVTHLAKELGISRSAVAQWYSIPDWHIPAISKILDIPQYQLRGEPAPRPKAVA
Ga0207670_1000040026	F049717	N/A	MTRRRVMERLERDDMIALEVYAKLVEHHASLDESVRVAGTIIGWSLHQSDGTLDAKLEGLTILMRDIRGLLLKNHGARRERED
Ga0207670_1000040027	F044569	GGAG	VSEKTEDEHDPATIWTGWIKRGELPGTIVGVLVDSWGWTVTLAGALDQEGGGYSLQGRLGKAPDNLRVDAIDDPITGKG
Ga0207670_100004009	F050455	GAGG	MTVLAGTIRASSTGNPDWKACDGGTVYVAENKVSGVTVLPRAAPAPGFGDHRDWKRRVGTKYGWTGLGPNGFRFRLPVAGDGNYVKTNDDTADT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207670_10000400

Overview

Ecosystem & Geography

Associated Families

Sequences