Scaffold Ga0207709_10369383

Overview

Basic Information

• Taxon OID: 3300025935
• Scaffold ID: Ga0207709_10369383
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1088
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001123	Metagenome / Metatranscriptome	770	Y
F003588	Metagenome / Metatranscriptome	478	Y
F103346	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207709_103693831	F003588	N/A	YFFDTNQGEPPVNSAITGSTQSMLIEGNTEDGVEPATDDAKKKVEEQPLRLEFKDGLLSVKAKQQPLPLVLLKIGEELGIPVDIQETSVAVVDAEISKLPVEDVVRQLSPHIRLYLRADLTRAERRALRLVLAEPPKATQ
Ga0207709_103693832	F001123	AGGAGG	LAKQNDINEEIAGLHSGSGVSGECSEIKKAFVEPTISVPVDVLEATTFFQAATSGVTN
Ga0207709_103693833	F103346	AGAAG	MEVIKVFDRPAFQRFYSIAGRFLVIESHDRELRNLIVDLFAGWQLTPVSLPDRSPDIRISFSCTEAQQSVPRDLDQFEIAEGGKCYTGATELYLEIGSALIHLENGSPVSVVVTFSELPREGDP