Scaffold Ga0207686_10000060

Overview

Basic Information

• Taxon OID: 3300025934
• Scaffold ID: Ga0207686_10000060
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 99241
• Total Scaffold Genes: 98
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 73 (74.49%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020994	Metagenome	221	Y
F024337	Metagenome	206	Y
F053358	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207686_1000006023	F024337	N/A	MQTLNQLGTDSIPLEEEEGRHTRRLVVGVLCALVLTGSVFGGYLFLRKRHERQVAAVAAAEAIKKTTPKVEVIVDDAMIEGKKSVLAGTIHNISSETLRNLAVELQLRKRSGGGLETKVVTPETGELAPDGRTRYRLEVAVQDYSSATFSKVLSGDTRTATAFKAIPGAARPPMEAPGSKTVVVGRPASPKGEEFINTEKNPGKVP
Ga0207686_1000006049	F053358	GGAGG	MAIWLWPALAANVFAWAIFFYLLSRRRWNVAALIVAILHLLFSMVVSVAPFRSLLDPNYPGLGLGFLRFEGMAVTLPAALMFAWAVAGAGLAVGKGRGRWMTLIVIGDIFLALNFGGSTLLEGRSDNWRIDFGEGKSITGLASAFILLFIFTFPFVASAIWAASRSRLNGSAPPLISNFQQKRKRQDEGPKDINNFRFSEGQV
Ga0207686_1000006079	F020994	AGG	MSPSIVRAVGIALLIAAVAVAILNLHRVADLRMPWMAPAIMVLGIGFVALARRRKG