Scaffold Ga0207686_10000009

Overview

Basic Information

• Taxon OID: 3300025934
• Scaffold ID: Ga0207686_10000009
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 241706
• Total Scaffold Genes: 201
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 145 (72.14%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002175	Metagenome / Metatranscriptome	587	Y
F015114	Metagenome	257	Y
F026603	Metagenome	197	Y
F084435	Metagenome	112	N
F087265	Metagenome	110	Y
F093466	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207686_10000009176	F026603	GAGG	MRTVRTPLALPFLVILVITAPQCIRAQTPAGPTLLTEQNSQRAIALDSVTRIRDPLPVVALYNFQQGRDPRTRVALFGINLDLMPGENASAVTAQARDSRSRNYSLKVEFVGKVPTLDWLTQVVVRLPDELAQAGDVWISVNLHGQTSNEVLFSVKVQSEPRTVTLAARRTINGVDNYVNACFSFEFGMNGADALSLTRNDWDVQFGNDPNRDAFSVTMVTDDRSRIQDMGALNWSDAFQVPVIPAYPVPTNEPQVNAVVGHMYVVHTADTSTDLYFLFRVEALEPKKSASISWKAVQRPLGD
Ga0207686_10000009177	F093466	AGGA	MPKVFRHDAITLQSGVSDEDFEKFMKKELIPYFSEAYRGPTRASRADLKSQSLLRDAKGRRKWLWVTAWDGSPESVRGSSFEHTRMNRIEATEAMLKKLASFGKRTTEKVFSELHSAKVGTNK
Ga0207686_10000009190	F015114	GGAGG	MTRSIVTLLGMTLLLTTAVLAQKIAKDLDDAITEASTWADWKPEDSMYPREDGKKALEDGKKCIDKIDEALSKGLAKSTEVETPKGKMTISEAREMCVKARDAGQKVFGDLTAAEEAQYEPFRKILSGDKLGLYNDRLKKYKLYGAGGKVLKTPEDYRDSTLWCTTGVDREGVLPVWSVDCWHFKGMARVGSVETRTGTGDQAPSTAFR
Ga0207686_10000009194	F084435	GAGG	LDDSVNTMFSWVSSWVFRGGRLSLALLATVGLVACDKPETVDEIRRGRLRCTERVERRRVNNYWWEVFIDEKPFVPEGRETNKVGQCQASRNPDVEVMVVLLGDNCWTLRLDGEKPVFTPIDKPEAMNSIEQFKIAKWSCNGHCLVWPTQMSFVDRNEVRKFSRLPSDFISLSPDFKTAVTEGVNEPEDNKLSVRIVDLETGEVKERTLTRANNLWLLDYTNGVEGIAAHFKWKRGPDGKDHLVYPAEESLKGSGTSPVR
Ga0207686_100000094	F002175	AGGAG	MAILTSSPGAENEVKVYDVPDDVLAQYAMTGDKAAAMFPEKGATEGIPKASAEMSPTKVDNTESLGEVQAYSRICICRELLCNPWRCWWHYYYCYC
Ga0207686_1000000954	F087265	GAG	MKRLLLLSVAVLGLPVLTLVRQPQMLSGHAGALVQSKKKSIIRRVSYFKYPVEMSFELNGQPLESTETVDGSERTNYFEADADWLNHLTIKIKNTSGKTITWMLVNLLFPEVTKDGAIALHQIFLGVDPDAPFARPEIRVAPNETFEIPLSTKYKDLGRLVNVIGSGMAIENVSKVEVEFHAALLDDGTRFQTGLWYRRDPKDPHKWIPIDN