Scaffold Ga0207686_10000008

Overview

Basic Information

• Taxon OID: 3300025934
• Scaffold ID: Ga0207686_10000008
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 245575
• Total Scaffold Genes: 191
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 138 (72.25%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006673	Metagenome / Metatranscriptome	367	Y
F091822	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207686_10000008135	F091822	AGGAGG	MDKSRLMSFEDAGKLLGGLHPNTLRQRKGGTERLTHVPGFGRRVMLIRDEVEALVDLKIGQAHAIERGRRKMLRLAS
Ga0207686_1000000821	F006673	N/A	MFACLLIALVTVGHTQNPQTAGGVIRLKVRYKSGDLTRELPRKRFFLIKGSLQDNRSLIEAIRKTETMSRDCYYRGQGASRQLIKWLNENDCESVYCREVDDTYINGSEAVPEFKAAYGQALQELKTPEVARRWLANYVPAEMRDGYYNSKQKAIGVLIEQAETSTGKPVMSIMTDRKGTAYLTGIEPGTYTISNLLASETEKTSLLWICEREVKTTDLSIAMKRPFILSNETDPKVKCEIVERPLPICNK