Scaffold Ga0207686_10000003

Overview

Basic Information

• Taxon OID: 3300025934
• Scaffold ID: Ga0207686_10000003
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 376934
• Total Scaffold Genes: 347
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 221 (63.69%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008187	Metagenome	337	Y
F009167	Metagenome	322	Y
F029214	Metagenome / Metatranscriptome	189	Y
F048526	Metagenome / Metatranscriptome	148	Y
F057627	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207686_10000003136	F009167	AGGAG	MRRVTKAFAAVALLAVASSVFKSTGAQTRNSSSKVQFSEAFVFPNECTNELMDVTDVTTVTCHDQQRVDGRFIEKCEIRQDVTATGRDTGITWRGTGTFKDEFVTTDPFNFSFINQGKVQLISRGSAVNTIIAFDDFVRMQDCVLTDDQHLASFDCRGNGKP
Ga0207686_10000003141	F057627	N/A	MDPTLLAGLTGILGAVIGSLLGGVFALKATKRQVEVMLEQIREDVHERLYSQSLEIMKFFAEHPEVYPYFYNNKPLAKAANEMERLRVLSTAEMVSGFMELVALQIEQQPAEIKPRWKAYIADTYNLSSVVREHLACCEAWYADDLLRLLPAKPAETTAQLFNQPARRIK
Ga0207686_10000003298	F008187	AGGAGG	MRVRLTIFLLILMLTVLTFQPSRASRAHAPRAFTAYLYVEVETKVYRKGIEISSENPEERRWYFSDVVEQPEDVPSYSLVKQKFMPYFSRNVMDPFEARGFSLDYGEQDVKVCGETSRANYETRAEAVAEREKEIEYRKNQSGNIYSFELTWGPAKGEETSKPKLIYRDKEQPNYGAAK
Ga0207686_10000003312	F029214	AGGA	MTNSTTTTMHKSTQGFARVESKSSDAAPMVINHLSGWIDVGEGKAESQAWIIPTRINAKA
Ga0207686_1000000387	F048526	AGG	MFALLIAANASAASWNGIEPFKSTKADVLKILGQPIGESPDGVLRFPVMGGSAQVSFVNEKFVTAKKLKPQLVGTVLEIVLQHDRSSDTPESMKLLKNSAFTRDETQTSTIFRNMKQGLIYTFQDTLKSTRYTFADEQLTKARRY