Scaffold Ga0207644_10138870

Overview

Basic Information

• Taxon OID: 3300025931
• Scaffold ID: Ga0207644_10138870
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1869
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F082857	Metagenome	113	Y
F093651	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207644_101388701	F093651	GGA	MLPTPTRMAALLAITLACATKTAAKDGVPPVARHVRNSTVISREELQDPTIVANDAMTTIRQLRPAFFMTRGPLSIKNTTAGQLQISQDFGPLQKSSALSTIDTRSLVEVRYLNATDAQARFGINANGGPVLVLLTSMQ
Ga0207644_101388703	F082857	GGAG	MNFSRIAIAALIAVTASCGGSRYPDTPGGAPAASRLERQANVISSEELQDPSIYSRDAYTAIRHLRPRFFTYHGPNSFQSNTGVIHISSDYGPLQDLKELSKMTTQGMFEVRYLNEEQAQARFGLNANGGPVIVLLYNKGAN