Basic Information | |
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Taxon OID | 3300025931 Open in IMG/M |
Scaffold ID | Ga0207644_10005496 Open in IMG/M |
Source Dataset Name | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8254 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan, Kellogg Biological Station | |||||||
Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F017350 | Metagenome / Metatranscriptome | 241 | Y |
F020724 | Metagenome / Metatranscriptome | 222 | Y |
F061005 | Metagenome / Metatranscriptome | 132 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0207644_100054965 | F061005 | GGAGG | VNRVFFGDLPTDAQAMLTRHLRVDFSHCIMKAPQWFSAWACNDRGHIIGIFTVEFPVWFEGKVTALVLDPRCLSRRTLRAIFTALFSKVKRLTAEVEPDNRRALKQVQRLGFIYEGYRPLGLEGTRDTIVYGMLKEDCRYLPGFEDDRPARTVPVFPGYVYERTH |
Ga0207644_100054967 | F020724 | N/A | MARLATILQIVSDVSLELGTTQIPVLQALGSSDQDIAQITALMGNVADELLLDPPYRDALGDGNWIYDPGLLVRKDRPTQDTDIVLFDPRLAIDGLKYRFLKAKGLEYGEEQRDFIARLNKLAGRNAPVIDLNIDDGRVQ |
Ga0207644_100054968 | F017350 | GGAG | MSETPTLVRFYSGWERDGNGPDGLPAYRQTVRVRLDRPPLLSVEREAEEADILNHPEPYALYQRTEAVRIEVHGYPLALWPACLPHLFQMCAARDIHTVEQLAQLVTKTRRSEAAKTMPPDVLELADRARKMIELQSKAGQYEELITDLQSQVEVLKEQITEAAQTIASQKTMIDTLKLKAAA |
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