Scaffold Ga0207701_10344842

Overview

Basic Information

• Taxon OID: 3300025930
• Scaffold ID: Ga0207701_10344842
• Source Dataset Name: Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1289
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013770	Metagenome / Metatranscriptome	268	Y
F018069	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207701_103448421	F013770	AGGA	VKKIITSSTIFVITAFIVFANAPSGFGKPEKKSAGSAQENSDPLVNAAMKNMETGVWSVNGTVTAKKPIKLQGLLSGQ
Ga0207701_103448422	F018069	N/A	LLVFPKPGYAEESPAIEKIRDASPDRQFALRISCSSEPEDSNDIDSNLITAVDLVSLPSKKIVLNVGEEGTPPHLIWSSDSKWVAFPLSEGHRVTDTHVYHRSGEELTHVETESLCVDAKGDVRNEYVNPVRWIKPGVLLLEQFDIFRGGNGEDVTYQFIAKFDEKTGKFQISSKKKIPSKE