Scaffold Ga0207701_10116021

Overview

Basic Information

• Taxon OID: 3300025930
• Scaffold ID: Ga0207701_10116021
• Source Dataset Name: Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2389
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046463	Metagenome / Metatranscriptome	151	Y
F087416	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207701_101160212	F046463	N/A	MSSGSRQSKKYKVKESYRSQAYTGVISLDPWTNSWAWKGQVDFNAGLHSMFTNRTFTTALQAEDHMRQSAHLCIDNRLG
Ga0207701_101160216	F087416	AGGAGG	MTEDKNWKILQIIPAQAGWKAVHCEGSANAERKISNRAIVCWALVEAVGGSAVGQREVRGIEQNVNDLTVVDDVIDMDEVGEDDTDRNQYFLGYNDPEAHKESDYWIKQGNDRFRTEKEKRLTKQRGQAALRVASLEEGLSAQR