Scaffold Ga0207701_10005898

Overview

Basic Information

• Taxon OID: 3300025930
• Scaffold ID: Ga0207701_10005898
• Source Dataset Name: Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12264
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000283	Metagenome / Metatranscriptome	1379	Y
F015542	Metagenome / Metatranscriptome	254	Y
F059188	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207701_1000589810	F015542	N/A	MQQAPGQQAPPLQQPVSLDEIIVALVSVITAAIKSRYFIILSC
Ga0207701_100058984	F059188	GGA	MHTTQPTLIVRLFAATLVAVAIIGLSAFAMHAPIQTQSPVTLKSIQTDRLETFYAAARPNCAWFREMVLPTGDSKLADKRPSCAWFVEMVLPTGDSKLMTENLRSVAATL
Ga0207701_100058987	F000283	GGA	MNSTPRSQNVLLCVAAIFIASCGTATFTKTGSDATIESLRNFELAFIDEFAVPGKKFNATAFNAKVNEGNAKFQQAIADEKFTARRPVLVNLKGQFDADAAHLRSKASRGKITPALATEMKNDVNKTYDHALGR