Scaffold Ga0207701_10004050

Overview

Basic Information

• Taxon OID: 3300025930
• Scaffold ID: Ga0207701_10004050
• Source Dataset Name: Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14926
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (65.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018398	Metagenome	235	Y
F078316	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207701_1000405010	F078316	GGAG	VSYDLVVAAPEAPGWRALRDAVGLDDVMMVPAEPRDDAWPAGGLGFCRVGHSVRTTGVDWNDGKLTVVLRALPAPEDCDLALRLAKAAARLAGATTIDTDYFSTVDLGELRRLHTTDWMREQAVSGTRILATLIREGRGPMAMPGPNRSCYVGTRLLAELEAAGPPDALADRMLEAMRRVQWGVPDGFRDAGVFVSGGQGDGDGARKTHFAIWLPDENLVLPRVDYVALRVTEGEIVMVPFAAVAELAGAHGTLLDECQLLLRAMGDDEWKAVVARARPLAASPRK
Ga0207701_100040504	F018398	GGA	VKWNQRLVRFAFDDGPPGGGRRGWDTAIAYWESRGFRCAHADGDRVIGRRGNWAGNLFSFDIERLVCDLDLRRESVRGWSIRLLLEGAFQVLTEWNVGELMLEPLMFRRTLLGLPSPPDLGRYREATRRASVASSLSLTILGRKLPEFWRQLFRELAAPHEPPTVERVRV