Scaffold Ga0207701_10002853

Overview

Basic Information

• Taxon OID: 3300025930
• Scaffold ID: Ga0207701_10002853
• Source Dataset Name: Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17852
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018779	Metagenome / Metatranscriptome	233	Y
F075054	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207701_100028536	F018779	GGAGG	MKVDYLENLSFPVGLLAQDSLSGIAEMVKEVFTRTRVDGAERDKLSYWQLIFLQSKANGCSYRGESLPHAQWQWPRDTWFQEQLGYRLKALEFAAHQPRN
Ga0207701_100028538	F075054	GGAG	MTYKEHLIFVAAQRDAGGCFWLPIVSVSWSEGERKHVVSLKGRPQDRFVLLTDAENSAVSIAHQWVDNRRQNGS