Scaffold Ga0207701_10001677

Overview

Basic Information

• Taxon OID: 3300025930
• Scaffold ID: Ga0207701_10001677
• Source Dataset Name: Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23127
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (73.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047825	Metagenome / Metatranscriptome	149	Y
F051959	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207701_1000167715	F051959	GGCGG	VLLLGFILFLTFRKPSDCLEVDTHFLGNIRVGCSYAENLLPAALADGVHGNNYTDHQAAFTLRLDEPTNWSIVQATTTVDETTQGRSAKAFKFPVGLLGDQNITILTNDGVVAFLYNKLVHQGKASLWVFRIPNQTTGVEEFVAAETDKLLRTGAVVVTLIAPLVSDPFRNRTPSVRQEIPTRRVQLTKMEVSPDHRNAVLLWESLVWGVNADIVARAVLGNRDTYYVIAIRVAPVGPNEEKVNQQLRTMIESFRPL
Ga0207701_100016776	F047825	AGGAGG	MKFCTILAVIIALVTIVGSSQGAQIVLPPTQVQIAAHLFTAPALEPNGSIAVCFATNLDSVARDLEARIIDSAGVEVTQTSSCGARLGSGATCESTAHFANNSPLRCAVGTSGAATTLRGALTTSTSGVFPFTGPATLSVPAE