NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207664_11056768

Scaffold Ga0207664_11056768


Overview

Basic Information
Taxon OID3300025929 Open in IMG/M
Scaffold IDGa0207664_11056768 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)727
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015906Metagenome / Metatranscriptome251Y
F018405Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0207664_110567681F018405N/AVRLVEQPQISGRGARVGAFMNTADVYRQAIKRTFASLYGIAPDKVDVSWSDAGDNITVRCADKTFTHETLHDDDEPTLEFVGDDAVSVRLTTAERLRLEGIDGLNGF
Ga0207664_110567682F015906N/AMSTGDVYKQAIKRVFANKYHDKRMAVYWGRDDDTIHVIASLRHYVHKIVSANEDTLEFASSVGDCVTVKLTDDECRELLGQSSAIHRATVTA

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