Scaffold Ga0207700_10588624

Overview

Basic Information

• Taxon OID: 3300025928
• Scaffold ID: Ga0207700_10588624
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 990
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001142	Metagenome / Metatranscriptome	766	Y
F001173	Metagenome / Metatranscriptome	757	Y
F027951	Metagenome / Metatranscriptome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207700_105886241	F001142	AGGA	MIMGRPATASAQPTDPFAVDEDQALAELDLAWSEGGYHGFTVEGGTWGAISSAGEVLTGGTPDALNLAISTHWQAMRG
Ga0207700_105886242	F027951	AGG	MSQGRDRPDLRVVDGRADPVLGRQRFEQAHPEAVILPPSAGRWRAIVPPGLIPGDGTRTTLGAWNLGDLMDQLDAIYTDSGRDTTG
Ga0207700_105886243	F001173	N/A	AEPGPATGAQRTELTMTAGEETPEIGQWIRDLAAGRRTFADRLADRQSVKIPSEDPDYGDLGQAFPAWSGSPREAILQPPRPEMTPSPRILQRAMDRDAGWEAAD