Scaffold Ga0207700_10011991

Overview

Basic Information

• Taxon OID: 3300025928
• Scaffold ID: Ga0207700_10011991
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5562
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031271	Metagenome / Metatranscriptome	183	Y
F087822	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207700_100119914	F031271	AGG	MDQQQRSTSPKFYKNAAILFFVIGCVLVWQAIVHHDWVFGAFAGITFLNALMTTLKLISLRETKQ
Ga0207700_100119916	F087822	AGG	MKRSFVLLLLVLARGLASAQATDCGALTHQALELSGFNESLDQMAAIMSSDQFMQQVRGRESMEQFAAIYVPIVKKEFSAGLLRHEVQRRMAAQCDLEQMTQTVQRLQTPFVARMLALDAATSTPEGQEKIKRYIKIAQLNPPTDDRMDVLDALDAALGSSDLVTDFTLAYLSGMMTGLGAPPEVVEQLRARRNELKAQMQNNMALSLSVTYHGVTRVDLQQYARELNAPPLKSFYSQLSKTFVEIAHERALSIGQSLKKAVPAPQS