NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207700_10003704

Scaffold Ga0207700_10003704


Overview

Basic Information
Taxon OID3300025928 Open in IMG/M
Scaffold IDGa0207700_10003704 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8916
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031594Metagenome182Y
F035917Metagenome171Y
F053711Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0207700_1000370417F053711N/AGLVEAVNATGLKIGGAWVNLSRFHPVTLPQHGAHVRVKIDPKGYIVDLENLSHGERVDQSPAVLSDKDERITRLAVLKAAAEFVGLWGQTREEVKSDHVLVLADRWLKWVEGN
Ga0207700_100037047F031594GAGGMSVRPVTFNADNSIDVVFDELGHSGTIPAAEVQWATDLQGGHNHNFIILNCPDGCGASSTWPVGGGADPVNGQQLFVNKVTSEGCACGNVAAEDANTLGESHVRLNVNRMDGPGRWRLA
Ga0207700_100037048F035917GGAGGMTDTPFQFKVVYVDPGDGLIVGMEPSGGAVGNKHKVAVLHDAAEYEVLMRTDPAYLSADKDHILAEPDHT

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