Scaffold Ga0207687_10019426

Overview

Basic Information

• Taxon OID: 3300025927
• Scaffold ID: Ga0207687_10019426
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4503
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012495	Metagenome / Metatranscriptome	280	Y
F084683	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207687_100194263	F012495	N/A	MTDLTIVVLLAVSLSALLLWLLIPRIQSSKTTAMQIPSTVNEALAAAKHYGYFPQIRQALSAGDTKYLRETAPRHVAKQALRERRAVALRFLEGLHEDFSNLLTLGRVIAALSPEVSREQETERLILSLKFQMLYVLVWLRLSSGSLPLEQLEHLTGLVGRLATRMNEAITEISARSMGQLSRSVDA
Ga0207687_100194264	F084683	GGA	MNHLENFLSWSTLSFEIVVCGFVFVRKVHRILPFFALYTCVILASTVGVWLTYTISGYTSLTSYYAYWGSVLLNAATRSLAIVELCRYGLRAYRGIWALAWYVLTTVSILLLAHAAIDTWGQPDKVAIYGATLDRDLAFASLVILAVLFVFRKYYAIPLETPQRGIAAGICFICAFDVVMSTILRNVYAGYLFDWFLESEKARWPALRAQFLRVNDIWSAFHLFFFMFGMGIWCFALRKPVPMPAESPVLLPAEVYREMSPAINMRLATFNDRMTELLKP