Basic Information | |
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Taxon OID | 3300025927 Open in IMG/M |
Scaffold ID | Ga0207687_10000006 Open in IMG/M |
Source Dataset Name | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 641680 |
Total Scaffold Genes | 581 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 350 (60.24%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Michigan, USA | |||||||
Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001931 | Metagenome / Metatranscriptome | 615 | Y |
F063979 | Metagenome | 129 | Y |
F105755 | Metagenome | 100 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0207687_1000000620 | F105755 | AGGAG | LRLIRPLIVLLFVFTASACTVNVRRYAFNAALENQKHIDKLHIGQTLAEVERVMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRSAPWESD |
Ga0207687_1000000679 | F001931 | N/A | MTAEPLRDQRTQILEGVVKTLLNDLKTGAGDKDRRRQVEEWMRTLAEKYPEFQIETGLRDYYLAEAERLRLDFEKAVELNEKLALGRSIEGFLDRAADYAKRIAEK |
Ga0207687_1000000684 | F063979 | GGAG | MNYDLAMMALDGLMRTPLTVRADAAGVTFTGEPAAFKELARLCLLLGGASDTDDSFELQPNVHVTKGSPAVNLTLSS |
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