Scaffold Ga0207687_10000006

Overview

Basic Information

• Taxon OID: 3300025927
• Scaffold ID: Ga0207687_10000006
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 641680
• Total Scaffold Genes: 581
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 350 (60.24%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001931	Metagenome / Metatranscriptome	615	Y
F063979	Metagenome	129	Y
F105755	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207687_1000000620	F105755	AGGAG	LRLIRPLIVLLFVFTASACTVNVRRYAFNAALENQKHIDKLHIGQTLAEVERVMGKPPERRNAHVRFDGISIEEWSYITDYVRRMDTTITFVGGKVDEIRSAPWESD
Ga0207687_1000000679	F001931	N/A	MTAEPLRDQRTQILEGVVKTLLNDLKTGAGDKDRRRQVEEWMRTLAEKYPEFQIETGLRDYYLAEAERLRLDFEKAVELNEKLALGRSIEGFLDRAADYAKRIAEK
Ga0207687_1000000684	F063979	GGAG	MNYDLAMMALDGLMRTPLTVRADAAGVTFTGEPAAFKELARLCLLLGGASDTDDSFELQPNVHVTKGSPAVNLTLSS