| Basic Information | |
|---|---|
| Taxon OID | 3300025927 Open in IMG/M |
| Scaffold ID | Ga0207687_10000003 Open in IMG/M |
| Source Dataset Name | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 875159 |
| Total Scaffold Genes | 777 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 445 (57.27%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Michigan, USA | |||||||
| Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002279 | Metagenome | 575 | Y |
| F024882 | Metagenome / Metatranscriptome | 204 | Y |
| F033211 | Metagenome / Metatranscriptome | 178 | Y |
| F037774 | Metagenome | 167 | Y |
| F066879 | Metagenome | 126 | Y |
| F072395 | Metagenome / Metatranscriptome | 121 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0207687_10000003169 | F002279 | N/A | MSSAPSQTISPVRDWSRQVAESLKQHGAWHTYLKLIEARGAYPDDLSLRGYTEILRNTIVRDFLAHPKSMQAVPKLTADFLSNFDRFNLTAQEGYLMSLIDGRLDLQKLLILSPFDQFTTLFTLAKLQHERAITVPQ |
| Ga0207687_10000003195 | F033211 | GGA | MDSTTTTVVLRYRDGRTERAALIETDVDRQIVRVSRDDGANDDVPFSTLKAIFFPRSADQALEEPAGSTIAVEFADGEVIRGVAQYNPERNGFFLYPLDRSKNDRIFVVNSAIVSIEVEK |
| Ga0207687_10000003399 | F037774 | GGA | VRIAPPPRNEVNFATVDSPSLQFLPRQQEAQIWKLDEDPIVIPGDHLNTYLGPVEAPQFARYETLDLTIGKYSTPGSDGFATVEIFRFPDFVKAFGAYSKQKNGNLRFIDIPNESFAKAHSVHVWRGPFYVRITGAGQGDAVLKLATFVADKMPPAPSKPAVFAFLPDKQRVIGSERYSADSAFGQPFLANSFQATFNIDNDLIDGIVIPAANKQAAGNILDQYKGLYLHNGKLLDPIPNLGEDNFTAEDRYLGRVVAFRIDRFVIAFNGYHDRQHLLDLATAADQRILGTIRKQLVTADKEAENADNGNTSTVPAWMQHKR |
| Ga0207687_10000003697 | F024882 | N/A | VPCDHIGPAELIEMAEADLRERGVAAAEGMRFRWSENPVDGMWASIVTEIERRGDEWIVTRLDRNREPLPDGETGFRAL |
| Ga0207687_10000003731 | F072395 | GGAGG | MGVCNWCGSAFPLTRSTRKYCTPRCKTNACLGRKPSRIRAAEVEALHELLHAELASAELFRERLRAIIAPNLPPIAEPSVPRLD |
| Ga0207687_100000038 | F066879 | GGAGG | LRLGVITLGHVHAEELNALTPYLQHLEQLVLDVPFDDPLSKHRAELNRAVDAASDDWLLIVREREIVDDAIAREITDAMRAQTAWGFRIRSIPMYAGKPLRIGVNEGELRLFHRRHLLRRGELGVQGTVIRLNNVLRSMSFDTVVAHREYLEKTGVPHSLLRRLLLFAHHAVVTRARDANTLRYLWIEAGYDHGD |
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