Scaffold Ga0207650_10008944

Overview

Basic Information

• Taxon OID: 3300025925
• Scaffold ID: Ga0207650_10008944
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6845
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000674	Metagenome / Metatranscriptome	941	Y
F017139	Metagenome / Metatranscriptome	242	Y
F070961	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207650_1000894412	F017139	GAG	MPQFARIFLVAFAAAATSCSSERPQKEAESKEIGRQLTASYYSCVRTSFASQLPTMVDRNMAMDQAFMVCQSEEAKLQAFENTLSGNPNVSSAAMSVHRNRLREELSRR
Ga0207650_1000894413	F000674	GAG	MNELRSILLRSIFIGPLLLAWAAGAQEHRFEDDPVVAVRENFVACDVLSQLQRVIGNPRFLLAGECEPLRVGDQVRVYARRGPYFCIYPHDRTSPCKWTHEKALSR
Ga0207650_100089444	F070961	AGG	MGKGNISHYYKMISPENQGRVYQVGKGYISRFYKTMSPEEQRAYNRWLKGNAILGLILAGGLVAMAIAGSNSAPSPAVANSKNSDVIASKPHPHEISARSRTKSPAP