Scaffold Ga0207650_10000011

Overview

Basic Information

• Taxon OID: 3300025925
• Scaffold ID: Ga0207650_10000011
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 450115
• Total Scaffold Genes: 369
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 275 (74.53%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004612	Metagenome / Metatranscriptome	431	Y
F007137	Metagenome / Metatranscriptome	357	Y
F016821	Metagenome	244	Y
F018607	Metagenome	234	Y
F022004	Metagenome	216	Y
F026703	Metagenome	197	Y
F028519	Metagenome	191	Y
F035269	Metagenome	172	Y
F045815	Metagenome / Metatranscriptome	152	Y
F081403	Metagenome / Metatranscriptome	114	Y
F092590	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207650_1000001115	F018607	GAG	MLAVHKCTLWIVLVSCLLAYGCTTSKDVAKTLGDLTTVRAELIKKFGEEDVNLHIYTFQHQTNISVTYVNSPLNLKTTEERATRAQETAEVVRQHYPSIKNVSEIWVGFMRVTTRLVVFHWTETIEIRGFDNEARALRAPDTAPSDPDPNRPGIRYSANQNKTEISSGAIQLEGTSEKGVTVFPHFSVAGDANKTKPKPPPEVTLDFAVFSEKPKFPNLTKIVFLSDYKIVYRTEGQFSTSKIADDTYSEFLYLKVPTAAFLKILSGRIVTIKLNEHEYTLTESEVLPMQRMSDYLK
Ga0207650_10000011175	F007137	AGGAG	MSAKATVIKIKVNFQLNTPNGLRRVIFGLEKDTQGDVVSWTINFQLFERTKKTDPFGDPIVSLDVDVDKALNSKAEKASKGLTANQAAFALGPAADDAKAAEDGEIDQDDAQKTVQKTLK
Ga0207650_1000001130	F035269	AGG	MIRHEKERTISYRITEEAWSAIEKRAASSGESPHQWARSVLLEKLSRVDELTPGERVLFHYLIRAQYLVTQGFQLIADHHLTSEEWKKLRANAKHRVPELAEAALASYAEMKC
Ga0207650_1000001131	F092590	AGGA	MASTSAFTEEGRTRIRNFQRRVSSYLILWILVAVAGSVGCVYLRTRYGYRPLQRLYLSQYIKASIKSILPLKRPSTYTLLVRVVRDEVTGKERIFGCTDDQVTPIRDETGRVRFDPKLGPFFELQAGIPHKYFYWRSVPQMDKHMYVWFRDQIYAGRSLIDLYWICFLPLPLIIAPGMFASVKLDMRMNQDYEAGELLRGVRILKPKEYARERRQQEAGIGIPALLPERPEL
Ga0207650_10000011311	F026703	GGAG	MIILRLVAVCVVLLVVFGCRSQNESLTNATPSTDTVVSSTPPFQTKEPERYRAVRTITAVNAEGQTLVTKTSVARNGELRRHESTSGLRTIVYLDVPDGKFVLLTDEKLYADVTDQSQISADPNDEGLESSPDALLHTDAGTTSYQKLGNEVIAGRNTNKYRIVVNSSTAPNVSQSETLMWIDEALQMPIKSETKSNGTHVTMEISEIKLEVDKSLFTIPEGYKKVTFLELRKRLIAPAQPDEN
Ga0207650_10000011324	F045815	N/A	MAISLRNLCALCVSAVKRNEKHINRRDAEDAETTQRNNAALDKDVCWRVDCKPEMDLFSNKAVRLLLGFSVSIWMAGGCLFGCANVAAQTSENVIDSGMSCHTKRPHANGPSFSPSANGMMNECPLVVNSTAVTSKNSTHVPDPGRVPVAALPSFEKQIAHTDNTLVATFLPDRGPTHLRCCVFLI
Ga0207650_10000011325	F081403	AGGAG	MNPRKHTFLILLLGLLLVAFAAVSAQTPSQGDQKKKTESCCAMKSCCNDDSCDMKKEGEANAEGKHDCCGESCDMKKHDEKMKHDKDAKHECCNIKDKNKKKNT
Ga0207650_10000011363	F004612	GGAGG	VSKQCAKLRGRYLVTMQSLVVKISNPDTVHAIAEAAKRQGTTPEAAALELLETAVLAQKPFEEIVEPIARSFDESGMSEAELDDLVKQTEKTIREERRRNK
Ga0207650_10000011369	F028519	GGAG	MEDKSKTFTWEWEDGETGLIRTIKIPMPNLDRDYDPSESREIILDRKPRLDNVEMPDWIEIIPPRKPN
Ga0207650_1000001177	F016821	AGG	MLKITKQAENARNTVSLHGHFTGEYVSEVEKALSENGCKRGNVALDLRNVTFVDRLAMEFLRRAKSKKIRIDNTPSYVTRWIEQEVS
Ga0207650_1000001179	F022004	AGGA	MKPRIRIIKRGAGAQTNNLPVNENEKTDQQLDRETANTVKSWVAEWEARNRLLKAAAFSLVRSLENRSESPTRRLAVVNG