Scaffold Ga0207650_10000009

Overview

Basic Information

• Taxon OID: 3300025925
• Scaffold ID: Ga0207650_10000009
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 483583
• Total Scaffold Genes: 383
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 268 (69.97%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004565	Metagenome / Metatranscriptome	433	Y
F004567	Metagenome / Metatranscriptome	433	Y
F056045	Metagenome	138	Y
F070241	Metagenome	123	Y
F073676	Metagenome	120	Y
F099379	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207650_10000009235	F004565	N/A	MNAIGFAPVPSEDSELDRLREACKRLNFALRAIKDAQGCLTHMNLGQARERLDNAQWQAREAKKVLAEIGKTKTKTSLERRRA
Ga0207650_10000009344	F070241	N/A	MITATSFLRLLLTFLLLCSLTLGQDQRRQNVQREQLRKLMTRVDVDVPENDARSNQLQTYRELKLSWTDPTKSTNELSTEAQTQAPRVSIVEDKKRSGGLPRQRSLELAPTLMFVAAVDASNKLRWWSIVADPRVVRSETQTATGELSSQDYYVSTVTFSVALPDDPEIATLRFYHPVWNGTDFDLKPLSVVTTR
Ga0207650_10000009374	F099379	GAGG	MRVMVSLNLADIMTATRPTTPPDVYEMPNDEVDHGDPSQESQLAPNCEQINAEGVR
Ga0207650_1000000969	F056045	GAG	MSDKKHLDRYPDPTELYRRKEANRKNEAKRPVSEKMETVARLRDFERSLVEIRKANRAKRAAKEIKIHIKTR
Ga0207650_1000000970	F073676	N/A	MSPVTILLRVIFGVILAAGLAMWAGIGFPVDLVFVMSVGIMAAIWGDRFILGFMSLMRFFNRGLRG
Ga0207650_1000000993	F004567	GAG	MKAKVTTNLTSVVMLAVLTPFLALAILVSIQTAGIRNNDVLLLLLTLSSAVLSGINGFGRRTPKAVPFSTAKTSSDTRLHLSARSSNNA