Scaffold Ga0207650_10000007

Overview

Basic Information

• Taxon OID: 3300025925
• Scaffold ID: Ga0207650_10000007
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 530810
• Total Scaffold Genes: 424
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 293 (69.10%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002176	Metagenome	587	Y
F002520	Metagenome / Metatranscriptome	552	Y
F002569	Metagenome / Metatranscriptome	547	Y
F003102	Metagenome	507	Y
F011619	Metagenome	289	Y
F016202	Metagenome / Metatranscriptome	249	Y
F096754	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207650_10000007135	F002520	AGGAG	MLDQEVDDKGTNQEEAQHMLGALRDQGFDSDNEKLAKALGRTIEQVDGMIKGAETIDDDVVMKARGIALNRGLKIE
Ga0207650_10000007190	F003102	N/A	MKIPLKYGLLITLGVIPWVLITRSLITYPQSIVHTLGTPIFFNVVQFVMIYLGLKALEHEKGDRPYFKEGLKTGVAISLVYGLTTSIFFVVVLVIVGTKWLASEPGAANAPLSRVILAAFLGLFLGALLFGLIYSTVVSFFLAKRRSED
Ga0207650_10000007197	F002176	N/A	MKLPFFLTLPQQEHNVRRIMPQYEPEAWRNADEPNGDPSKREQCRLLDMLGRINYRILSGNRVYVEVGGVVYKTVYGGYWRSVFTGIEHYLLHCEQVSSAVWKEENTNAVDLPIAYSNGGWTTRGHSLSFILNRE
Ga0207650_10000007282	F002569	AGG	MKVLAQANSILSIQFPLARRRTPKYSLIKSMTLVPSTLDFMRVNNATVREGRAHRVWPPDVLRKFQTAEIITELRTPHYVLRDRSITRL
Ga0207650_10000007413	F096754	N/A	MSRNYFRAFGALTLLLGPLQFDCTFLRAQTQTQFLRALFLMAAVEVLGFGLAFLRKWAALYFSLPLFWFGIRLVVDSIYEVAFPLNLVPMLLGISLMLPLVVTIRLWKQLTWGGRFF
Ga0207650_10000007416	F011619	GGAG	MKRGFAFCVVVVFLNIACGLHKQSQTSESTNQPAQAAKESPAKPEAPTNPGELQPGQASGTYTAKGEVVELKYSYAGRAERFGTDSLVVLVTDKPIPPEALAEEIKSATLLEGEKIRGLEYVFDDNGMWVRYHPGQYQESSSNKLKEYKVENGTVRGIDDNAGNLSDGKYARSVKFVAAIAK
Ga0207650_1000000795	F016202	AGGAG	MKYIQRAIAFSGLLVLLTFSSAFGQSDRQTIIHIPFNFSVGEKSFPSGKYVIERNRNNSDTVWVIRNKETDRSAIVVTRSARANDVVEETRLVFNRYDDLYFLSEFWIVGGQNGHEVPTSSREKALEKAVAVRRTELLIDRGK