Scaffold Ga0207650_10000005

Overview

Basic Information

• Taxon OID: 3300025925
• Scaffold ID: Ga0207650_10000005
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 663190
• Total Scaffold Genes: 486
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 359 (73.87%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006953	Metagenome / Metatranscriptome	361	Y
F011242	Metagenome	293	Y
F012396	Metagenome / Metatranscriptome	281	Y
F028220	Metagenome	192	Y
F032437	Metagenome	180	Y
F086524	Metagenome	110	Y
F092240	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207650_10000005144	F032437	GAG	MRWKSRLTAFAICFAIGLVVAVIVAAFLRQRHHKTQPPLTRCQTDDYSNQPEEVLTAIKNNEVSVRREMFKRLLLRPEISTVYYDYERDLNYPERADRARLEYVQLDDTPPAEAVLTFVRLDHPMALIFTKDSCGWKPVGALSSWLRFEDYPYDNWLTLPTTIKPGIHELLVRDSNGDATSYIRKARLLRLDRGHLTQIAEFDEEILEPVEAYGDQNWNDVKQKRSSKVTFLPGENAGLEIETTTSLIKLHGPIPSYSYWLETDGTWHTQKRNWNARSSQVLKVLKVHKEPSQFWNATTGRFAGK
Ga0207650_10000005164	F011242	AGGAGG	MQNNYEAPELTLIGEANEVVMGAAIGGNDFPKEFGLDFEFEQD
Ga0207650_10000005197	F092240	GAGG	MTKTITILIALIIAGSTQTKAQAPVQLTIKAGTEIGESKDRFKVGDSILITLTMTNTSADPQNVCLSSNLYQNLPRLTKDGQLIPIMKWTSSVRQIAKHDATCKDINLPQKIVLDPKAQKDLDWFVLVDSNVSTGAESWYDALQPGTYELVLQRRLDCCDGSTIESNKITFTVVP
Ga0207650_10000005274	F012396	AGGGGG	MDLRVGGVYCLPNGRELIVLCKRQNGSVSYRLSCRTDQYEISDDGRLICDGKLTAWDVSNLSDTGRSVGVERSATLTVTHDF
Ga0207650_10000005321	F006953	N/A	MKSLLSLSLLLVIGALVSVAAARPRPEIMGISLDMKRDDAVARLKAIGSLEKETRKRQEVWAVKDVRISHLLVGYDAENRVRYVTAIARTDGPRIRYQEVADLKSAQRSIAPGNHKFTWEIEGRRGHAFILIARGHDAQYLDTYSVKKKDQEEEEID
Ga0207650_10000005416	F086524	GGAG	MVKTSEPDPEPFAIESEAWETALKPYSTEAHAAYDLARRLMEIKRFLTTKPPNVSMAVLALDEAAELIFPFTQFHEVAYDLYLTAIDGHPSKAQENLMESLGIRY
Ga0207650_10000005484	F028220	GGAGG	MLRISVSLIVLFSVLAGVCAQQDYVDRLMKLSELSSNQKFREAINGYKRLEAEPGTPEWLKAGSEYEIAELYAALNDTDNAIAALNRAVQLGFDDCLTPRTSEHMAKSLKNPQATQALAGMKITEADFRELVWLKSQVEHAEHDARMMITDNINRVDQQPTEIPQVQLPSRSTTSASVLYWRQQLLLIQRAQREYVRKSDEERMVHAATMGVINGASTSAVLESARQARVTAESRKAEIRKRAFVPMATSNGTRPCSEWTVAPR