Scaffold Ga0207650_10000001

Overview

Basic Information

• Taxon OID: 3300025925
• Scaffold ID: Ga0207650_10000001
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1545726
• Total Scaffold Genes: 1275
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 878 (68.86%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 13 (100.00%)
• Associated Families: 13

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001123	Metagenome / Metatranscriptome	770	Y
F001316	Metagenome / Metatranscriptome	724	Y
F001576	Metagenome / Metatranscriptome	669	Y
F003258	Metagenome	497	Y
F004628	Metagenome / Metatranscriptome	430	Y
F008036	Metagenome	340	Y
F014158	Metagenome	265	Y
F022075	Metagenome / Metatranscriptome	216	Y
F037929	Metagenome	167	Y
F040316	Metagenome / Metatranscriptome	162	Y
F041430	Metagenome	160	Y
F079736	Metagenome	115	Y
F104945	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207650_100000011002	F014158	AGGAG	MSIDFQDITIIANPEEAQVRDGSRRHSKKFPFQLSDAPTPEWVALFNREWAMRTVSNRAASVHGDILVLECAIEELPLLAENLEVDMIAANQQYRERLLRQKVKGQQASDQGHERERIDDNAAIIEALAKLKKR
Ga0207650_1000000111	F037929	GAGG	MTTQKQLSHLSFAAIILVFAALPALAQTGSVDNQTAVATTSNLVESDQLAALRKDRASIPTKKSPIAVAPVVIEKQQPSFSATQFMKSATAPAVISDITTFERSSLEKPRFNETSSKTINFVPSRGPKFPW
Ga0207650_100000011153	F022075	AGGGGG	MRVEKQIRFNEWLLGSTILCDSCGCLWLVPAAQKQDSYLCRQCGSEATNKPAPMSGDQPNKRSNH
Ga0207650_1000000115	F041430	AGGAG	MKLMFRLTLSFLIVISFAGLAMADDKPDARAGRTMEVQARVIAINADGQSLELYDSPSRTRISVQLAQLPKAERKALIRSDVRELVVRGQASMVAGRLTIHAESVQWSDKEASK
Ga0207650_10000001277	F079736	AGGAG	MAVVVNEVEVVPAERAAEKAEQAQGGGEQAQPSEHDIRRMVEQQMSRCERVWAY
Ga0207650_10000001336	F001316	AGGA	LKALLLIVGILVATAGGVITYRALYVEPKSGVVITDTGIREIPNQAKVVGGALLFVSGSALALYAATRKK
Ga0207650_10000001368	F104945	GGAGG	MPPDVKKVKALQLNLEGLLRLLGGSSDDKQKFLEMIIGITTPMEVKLINGQIDALAAHTKAVQTGAKALQTTAQQIAKRR
Ga0207650_10000001454	F003258	AGGA	MRTLTPGQWYLRFTCEHCQQKEILFADLSRGQTKIKATYVVQCSSCSHTGSYDGDDIERYQHPSIADT
Ga0207650_10000001538	F001123	AGGAGG	LAKQNEIINNEEIAGSHNGSGESSEIKKVFVEPAISVPVDVLEATTFFQSATSGATN
Ga0207650_10000001539	F001576	GAGG	LTVMVCLALFTTSLAQKPTTSETDTKQTQKPADAKPAAKLPYSIKTRKNPILNISLKAEKAKMSEVAQELSKQLKVPVFLGPERQNEIVTLEFSELTLEPALQLMSPTVYIDYEIDTGSGAQPKPLGIYLFDTNQGEPPLTSVINGATQSMLIEGNTEDGVEPESEDEKKKLEEQPLRIQFKDNLLSVKAKKQPVALVLLKIGEELGIPVDIQDQNVATVIDAEISRLPVEDVVRQLSPQIRLYVRADLTHAERRALRIVLAEPPKATQ
Ga0207650_1000000157	F040316	AGG	MLLMTLLQENVATSSFDDLGKLLLGGVAAAIVVAVGFVLIQFRMRDKKPPTSNFISITDKDPSSSV
Ga0207650_10000001578	F004628	AGGAG	MTRSLLHRRLAIMLVLPFLFVSAYAQRNPDQEVRLKELLSVPGKLVSEAKSSRPATELKLTGYRVEEIKLPRQLNVQVRGQQVAVDKAWRVTLQGGPFPVRAMPAVIWIDDEIAGYGIENETLSQVTAITFDSSLIREGGVVSISYGEDKEGRIRISQRLRLTREGGNQ
Ga0207650_10000001880	F008036	AGGAGG	MAEEGGGGAGSVGVVAIVVIFVLIILVGVFMFRGRIFGGGRSQKIDVNIQTPSK